Processing fees

PCI compliance fees: what's fair and what's padding

What a PCI compliance fee pays for, when a non-compliance fee is padding, what PCI rules actually require, and how to stop paying monthly penalty fees.

Clearo Payments teamFacts checked 8 min read

Short answer

A PCI compliance fee is a charge your processor adds, monthly or yearly, for PCI-related services such as a self-assessment portal or vulnerability scans. A PCI non-compliance fee is a penalty for not filing your annual validation. The PCI Security Standards Council doesn't set either one; enforcement sits with the card brands and acquiring banks, so ask your processor what you're paying for.

A PCI compliance fee is a charge from your payment processor tied to PCI DSS, the card industry's data security standard. It usually comes in one of two forms: a regular fee, monthly or yearly, for compliance tools or services, and a non-compliance fee that's charged when you haven't shown you're compliant. The first can be fair. The second is usually avoidable.

This guide sticks to the fees. For the standard itself, go to the source: the PCI Security Standards Council's merchant resources.

What is a PCI compliance fee?

It's whatever your processor decides to charge under that name, which is why it's worth reading closely. On statements you'll see versions like these:

What it's called on statementsWhat it's supposed to pay forFair?
PCI compliance fee, PCI program fee or annual PCI feeA compliance program: a portal for your questionnaire, help with the questions, and scans if you need themFair when it buys tools you actually use
PCI non-compliance fee or non-validation feeNothing. It's a penalty charged while your validation is missing or out of dateAvoidable: file your validation
A vague "regulatory" or "compliance" feeUnclearAsk what it covers, in writing

Non-validation fees aren't something processors invented out of thin air. Amex's Merchant Operating Guide says "American Express and your Merchant Services Provider may have the right to impose non-validation fees on you and terminate Card acceptance" if you don't meet the requirements or fail to provide the mandatory validation documentation by the deadline (American Express Merchant Operating Guide). What your processor charges, and when, comes from your agreement.

To find these fees, look past the processing section of your statement to the account or monthly fees area, and search for "PCI," "compliance," "validation" and "regulatory." A fee billed once a year shows up on only one statement, so check a full year of them. Our guide to reading a merchant statement shows where each section usually sits.

Who requires PCI compliance, and who sets the fees?

The PCI Security Standards Council writes the standards. It doesn't enforce them, and it doesn't fine anyone. In the Council's words, "Compliance and enforcement of PCI Standards is the role of the payment brands and acquiring banks, not the PCI SSC." It also says it "does not receive copies of compliance assessment reports, nor is it involved in and has no information about penalties or fines for non-compliance" (PCI SSC).

The card brands push the job down to the banks that sign up merchants. Visa says "acquirers must ensure that their merchants validate at the appropriate level and obtain the required compliance validation documentation from their merchants" (Visa). Your processor works with that acquiring bank, so your processor is usually the one asking for your paperwork, and the one charging you when it doesn't arrive.

The upshot: the Council doesn't set these fees, so the amount on your statement is your processor's price, and you're allowed to question it. The standard and the questionnaires are the same whether you're in Atlanta or Minneapolis. What changes the paperwork is how you take cards.

What do you actually have to do?

For most small merchants, proving compliance comes down to two things: a yearly self-assessment questionnaire, and quarterly scans if your setup requires them. Confirm the details with your processor. The Council tells merchants to take questions about "compliance validation and reporting requirements" to their acquirer or the payment brands they do business with (PCI SSC).

Size matters here too. Visa says merchant levels are based on "the corporate entity's total volume of Visa transactions (inclusive of credit, debit and prepaid)" (Visa), so a growing business can move into a level with different validation requirements. Your processor should tell you if that happens, and our guide to PCI compliance levels lists each card network's thresholds.

The self-assessment questionnaire

SAQs are "validation tools for use by SAQ-eligible merchants and service providers to perform and report the results of their PCI DSS self-assessments," according to the Council's merchant resources, and each one "was created to support a specific type of environment" (PCI SSC FAQ). The right SAQ depends on how you take cards:

How you take cardsSAQ the PCI SSC guide describes for it
Online, mail or phone orders, with all card data handling fully outsourced to PCI DSS validated third partiesSAQ A
Online, where your website doesn't receive card data but affects the security of the payment pageSAQ A-EP
Only imprint machines or standalone dial-out terminals, with no electronic card data storageSAQ B
Only standalone, PCI-listed approved terminals with an IP connection to your processorSAQ B-IP
Typing one sale at a time into a third-party virtual terminal on an isolated computerSAQ C-VT
Payment application systems, such as a POS system, connected to the internet, with no electronic card data storageSAQ C
Only terminals in a PCI-listed point-to-point encryption (P2PE) solutionSAQ P2PE
A phone or tablet with a secure card reader in a listed SPoC solutionSAQ SPoC
Anything that doesn't fit the descriptions aboveSAQ D for Merchants

That table paraphrases the eligibility sections of the Council's own questionnaires: the PCI DSS v4.0.1 versions of SAQ A-EP, SAQ B-IP, SAQ C-VT, SAQ P2PE and SAQ D for Merchants, and the v4.0 versions of SAQ B and SAQ C. The SPoC questionnaire goes with a standard the Council is retiring, with a sunset period that runs to October 31, 2026. The Council has also announced updates for merchants validating to SAQ A, so confirm your SAQ with your processor before you start.

Quarterly external scans

Some SAQs require scans by an Approved Scanning Vendor (ASV). PCI DSS Requirement 11.3.2 "requires evidence of passing external scans, performed by an ASV, at least once every three months" (PCI SSC), and the Council notes that SAQ A merchants are now completing that requirement for the first time.

The Council's summary of the v4 SAQs says the SAQ A scan requirement applies to merchant websites that redirect payment transactions to a third-party provider, or that embed a provider's payment page or form, such as an iframe (PCI SSC). If you sell through online payments with a hosted or embedded checkout, ask whether scans now apply to you, and whether your PCI fee covers them.

Which PCI fees are reasonable, and which are padding?

Our rule of thumb: a PCI fee is reasonable when you can name what it bought, and padding when you can't. A good program is easy to find, tells you which SAQ it expects, reminds you before deadlines and confirms when your validation is accepted. If yours does none of that, the fee is paying for a logo. Our page on credit card processing fees lists PCI fees with the other extra charges worth checking.

Usually reasonable:

  • A clearly disclosed annual or monthly fee that gets you a working SAQ portal and someone who answers questions.
  • Scan fees, when your SAQ requires ASV scans and the fee actually covers them.
  • A non-compliance fee that stops the month you validate, after you were told the deadline. Amex's guide says your provider "will notify you separately of the applicable deadline for each annual and quarterly reporting period."

Usually padding:

  • A PCI fee with nothing behind it: no portal, no scans, no help.
  • A compliance fee and a non-compliance fee in the same month, with no help to fix the problem.
  • A non-compliance fee that keeps appearing after you submitted your validation.
  • Scan fees you can't connect to an actual scan report.
  • A new "regulatory" or "compliance" line that showed up without notice or explanation.

Here's what the penalty costs in practice, with made-up numbers. Say your statement shows a $99 annual PCI fee and a $29.95 monthly non-compliance fee that ran for 10 months. The non-compliance fees total $299.50, about three times the annual fee, and they bought nothing that filing the questionnaire wouldn't have fixed. Together, the two fees come to $398.50. If your processor bills them per merchant account and you have three locations, that's $1,195.50 for the year.

What usually triggers a PCI non-compliance fee?

These are the gaps that let a non-compliance fee start, or keep it running:

  • Assuming your processor handles it. Using a processor's terminal or checkout doesn't file your validation for you. The questionnaire and its attestation are yours to complete and submit.
  • Filing the wrong SAQ. If the questionnaire doesn't match how you take cards, your validation may not hold up. Use the table above and confirm it with your processor.
  • Forgetting the renewal. Validation is a yearly job, and where scans are required, they're quarterly.
  • Missing a scan. If your SAQ includes Requirement 11.3.2, a skipped quarter means you aren't meeting it for that period.
  • Changing how you take cards without updating anything. Adding online sales, a new terminal or phone orders can change which SAQ applies.
  • Opening another location or merchant account. Ask whether each account needs its own validation, because a second account can mean a second set of fees.

How do you stop paying PCI non-compliance fees?

  1. Find the fee on your statement and note the month it started.
  2. Ask your processor how to submit your validation and which SAQ they expect from you.
  3. Check that SAQ against how you take cards, using the table above.
  4. Complete the SAQ and its attestation of compliance, the signed statement that goes with it.
  5. If your SAQ requires quarterly external scans, schedule them with a PCI SSC Approved Scanning Vendor and keep the passing reports.
  6. Submit everything and get written confirmation with the date.
  7. Check your next statement. If the fee is still there, ask for it to be reversed.
  8. Put next year's renewal on your calendar. Validation isn't a one-time job; Amex's guide refers to deadlines for "each annual and quarterly reporting period."

Two longer-term fixes help too. Taking card data off your own systems, with a hosted checkout online or P2PE terminals in store, can move you to an SAQ written for that setup. And if you key phone orders on a virtual terminal, SAQ C-VT covers that case, provided you meet its conditions and your provider's virtual terminal is PCI DSS validated, so ask.

What should you ask a processor about PCI fees?

  • What is the PCI fee, how often is it charged, and what exactly does it include?
  • Are ASV scans included if my SAQ needs them?
  • Which SAQ do you expect from me, and how do I submit it?
  • What is the non-compliance fee, when does it start, and how much notice will I get?
  • Does the non-compliance fee stop the month I validate, and will you refund fees charged after I submitted?
  • Is any PCI fee charged per location or per merchant account?
  • Who helps me if I get stuck on the questionnaire?

On that last question: we offer PCI compliance support, and every Clearo client has a dedicated rep to call. Whoever you choose, get the answers to all seven in writing before you sign.

The next step

Pull your last few statements and add up every line with "PCI" or "compliance" in it. If you're paying a non-compliance fee, file your validation this month. Then send us a statement for a free statement review and we'll flag every compliance-related fee and what it costs you a year. Questions about the questionnaire? Contact us. Our guides to hidden fees in credit card processing and the cheapest credit card processing cover the rest of your statement.

About this guide

Written by the Clearo Payments team. Clearo provides interchange-plus payment processing to merchants in the US and Canada, with no long-term contracts and no cancellation fees. Card network rules and laws change, so check the sources below before you act on anything here. Our editorial standards explain how we source and update guides. Questions about your own setup? Ask our team.

Sources

Official and primary sources we checked while writing this guide.

  1. PCI Security Standards Council At-a-Glance (listings.pcisecuritystandards.org)
  2. Merchant Resources (PCI Security Standards Council) (pcisecuritystandards.org)
  3. What is the intent of the SAQ eligibility criteria? (PCI SSC FAQ) (pcisecuritystandards.org)
  4. PCI DSS v4.0.1 SAQ A-EP (PCI SSC) (docs-prv.pcisecuritystandards.org)
  5. PCI DSS v4.0.1 SAQ B-IP (PCI SSC) (docs-prv.pcisecuritystandards.org)
  6. PCI DSS v4.0.1 SAQ C-VT (PCI SSC) (docs-prv.pcisecuritystandards.org)
  7. PCI DSS v4.0.1 SAQ P2PE (PCI SSC) (docs-prv.pcisecuritystandards.org)
  8. PCI DSS v4.0.1 SAQ D for Merchants (PCI SSC) (docs-prv.pcisecuritystandards.org)
  9. PCI DSS v4.0 SAQ B (PCI SSC) (listings.pcisecuritystandards.org)
  10. PCI DSS v4.0 SAQ C (PCI SSC) (listings.pcisecuritystandards.org)
  11. Software-based PIN Entry on COTS (SPoC) standard (PCI SSC) (pcisecuritystandards.org)
  12. Important Updates Announced for Merchants Validating to Self-Assessment Questionnaire A (PCI SSC blog) (blog.pcisecuritystandards.org)
  13. Resource Guide: Vulnerability Scans and Approved Scanning Vendors (PCI SSC blog) (blog.pcisecuritystandards.org)
  14. PCI DSS v4: What's New with Self-Assessment Questionnaires (PCI SSC blog) (blog.pcisecuritystandards.org)
  15. Account Information Security (AIS) Program and PCI (Visa) (corporate.visa.com)
  16. American Express Merchant Operating Guide, All Regions, April 2026 (icm.aexp-static.com)

Common questions

Who sets the PCI compliance fee?

Your processor. The PCI Security Standards Council writes the standard, but it says compliance and enforcement are the role of the payment brands and acquiring banks, and that it has no information about penalties or fines for non-compliance. The amount and timing of the PCI fees on your statement come from your processing agreement.

How much should a PCI compliance fee be?

We know of no official benchmark; processors set their own PCI fees. Judge the fee by what it buys: a working questionnaire portal, help when you get stuck, and ASV scans if your SAQ requires them. A fee you can't connect to any tool or service is worth questioning, and a non-compliance fee is worth eliminating.

Can I get a PCI non-compliance fee refunded?

You can ask. If the fee was charged after you submitted your validation, or without the notice your agreement promises, request a reversal in writing and include your submission date. Refunds for months when you genuinely weren't validated are up to your processor, so the surest fix is filing before the deadline.

Do I need quarterly vulnerability scans for PCI compliance?

Only if your SAQ includes them. PCI DSS Requirement 11.3.2 calls for passing external scans by an Approved Scanning Vendor at least once every three months, and under PCI DSS v4 that reaches SAQ A merchants whose websites redirect to, or embed, a third-party payment page. Ask your processor which SAQ and scans apply to you.

Does paying a PCI compliance fee make me compliant?

No. Paying the fee doesn't validate anything by itself. You still have to complete the right SAQ, run any required scans and submit your validation to your processor or acquirer. Until you do, a non-compliance fee can apply even while you're paying the regular PCI fee.

Disclaimer: general information, not professional advice

This guide is general educational information, not legal, tax, accounting or financial advice. Rules and rates vary by place and change, so confirm them with the official source and a qualified professional before you act. Full terms are in our Terms of Service.

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